Index

A

add_coupling_constraints() (in module pymgpipe.coupling)

add_diet_to_model() (in module pymgpipe.diet)

B

build() (in module pymgpipe.modeling)

build_models() (in module pymgpipe.main)

C

compute_nmpcs() (in module pymgpipe.nmpc)

Constants (class in pymgpipe.utils) constrain_reactions() (in module pymgpipe.utils)

D

DIET_REGEX (pymgpipe.utils.Constants attribute)

E

EX_REGEX (pymgpipe.utils.Constants attribute)

F

FAST (pymgpipe.fva.FVA_TYPE attribute) FE_REGEX (pymgpipe.utils.Constants attribute)

fva() (in module pymgpipe.fva) FVA_TYPE (class in pymgpipe.fva)

G

get_abundances() (in module pymgpipe.utils) get_available_diets() (in module pymgpipe.diet) get_diet() (in module pymgpipe.diet)

get_net_reactions() (in module pymgpipe.utils) get_reaction_bounds() (in module pymgpipe.utils) get_reactions() (in module pymgpipe.utils) get_reverse_var() (in module pymgpipe.utils)

I

InfeasibleModelException

L

load_cobra_model() (in module pymgpipe.io)

load_dataframe() (in module pymgpipe.utils) load_model() (in module pymgpipe.io)

M

module pymgpipe pymgpipe.coupling pymgpipe.diet pymgpipe.fva pymgpipe.io pymgpipe.main pymgpipe.modeling pymgpipe.nmpc pymgpipe.utils

P

path (pymgpipe.fva.VFFVA property) port_mgpipe_model() (in module pymgpipe.utils) pymgpipe module pymgpipe.coupling module pymgpipe.diet module pymgpipe.fva module

pymgpipe.io module pymgpipe.main module pymgpipe.modeling module pymgpipe.nmpc module pymgpipe.utils module

R

REGULAR (pymgpipe.fva.FVA_TYPE attribute) remove_coupling_constraints() (in module pymgpipe.coupling)

remove_diet() (in module pymgpipe.diet) remove_reverse_vars() (in module pymgpipe.utils)

S

set_objective() (in module pymgpipe.utils) set_reaction_bounds() (in module pymgpipe.utils)

show_available_solvers() (in module pymgpipe.io) solve_model() (in module pymgpipe.utils) suppress_stdout() (in module pymgpipe.io)

U

UnsupportedSolverException

V

VFFVA (class in pymgpipe.fva)

W

write_cobra_model() (in module pymgpipe.io)

write_lp_problem() (in module pymgpipe.io)